PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G539500.1.p
Common NameLOC101757440, SETIT_037727mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 179aa    MW: 18533.8 Da    PI: 6.2264
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G539500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.61.7e-37141141100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkCa++Cv+ap+f+ae+ +++fa++hk+FGasn  kll+++ + +r++a+++++yeA+ar+rdP+yG+v++i++lqqq+++l
  Seita.9G539500.1.p  14 PCGACKFLRRKCAAECVFAPHFCAEDgAAQFAAIHKVFGASNAAKLLQQVAPADRSEAAATVTYEAQARLRDPIYGCVAHIFALQQQVASL 104
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         + ++ ++k++
  Seita.9G539500.1.p 105 QMQVLQAKAQ 114
                         **99888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.59313115IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3614111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MASSGSGGGT PGSPCGACKF LRRKCAAECV FAPHFCAEDG AAQFAAIHKV FGASNAAKLL  60
QQVAPADRSE AAATVTYEAQ ARLRDPIYGC VAHIFALQQQ VASLQMQVLQ AKAQVAQTMT  120
AGGPQAAGSP LLQRWPMEPE SLSTQSSGCY SAPSCDGSAS LQEMYCGFGE QEEGSYTR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0517340.0EF051734.1 Zea mays RTCN mRNA, complete cds.
GenBankKJ7283750.0KJ728375.1 Zea mays clone pUT6657 LOB transcription factor (LOB21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985693.11e-127PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB72e-55LBD16_ARATH; LOB domain-containing protein 16
TrEMBLK4AFS01e-127K4AFS0_SETIT; Uncharacterized protein
STRINGSi037727m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102623344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.17e-48lateral organ boundaries-domain 16